I'm having a huge problem where if I die or "restart encounter", instead of restarting me at the previous checkpoint, it actually restarts me at the *next* checkpoint, thus skipping the encounter entirely! This has happened to me twice in the snowy village around the 85% mark, once causing me to miss what I *think* was a major story point. (boss fight of sorts) Hopefully my PS+ cloud save wasn't too long ago...
120 GB PS3 Slim
Exactly the same bug here. Lakeside resort. In the village as Ellie. Died when fighting goons and spawned near an alley (presumably the next checkpoint). No idea where I was so I jumped through a window and now I'm stuck running around in a "burning" restaurant without any fire. >: